Bioinformatics Toolbox 3.2

Latest Features

Version 3.2

Released: 09 Oct 2008
 

Version 3.2, part of Release 2008b, includes the following enhancements:

• Capability to contain microarray experiment data and metadata in one object
• New function to superpose 3-D protein structures
• New function to read and analyze GEO series format files
• Enhanced Robust Multiarray Average (RMA) and GC Robust Multiarray Average (GCRMA) analysis
• New functions for reading and analyzing Affymetrix® SNP Mapping arrays
• Enhanced performance when reading data from mzXML file
• New functions to read and write NetCDF mass spectrometry files

See the Release Notes for details.

Update Now

• Download the latest version if your software maintenance service is current.
• Purchase or request a renewal quote if your maintenance service has lapsed.
• Try the latest version by downloading or requesting trial software.

---

Version 3.1

Released: 01 Mar 2008
 

Version 3.1, part of Release 2008a, includes the following enhancements:

• Illumina® BeadStudio microarray data support
• Expanded clustergram feature with more flexible clustering analysis and additional annotation and export functionality
• Expanded Ramachandran plotting with more accessible residue information and ability to display reference regions and plot multiple chains and models
• Expanded array comparative genomic hybridization (aCGH) visualization with frequency plot
• Gene Expression Omnibus (GEO) SOFT data support expanded to allow the retrieval of Data Set (GDS) data
• Improved performance of pairwise sequence alignment
• New demo on analyzing metagenomic data

See the Release Notes for details.

Version 3.0

Released: 01 Sep 2007
 

Version 3.0, part of Release 2007b, includes the following enhancements:

• Array comparative genomic hybridization (aCGH) analysis and visualization
• RNA secondary structure prediction and visualization
• BLAST reports from local databases
• Graph clustering
• Common motifs searching

See the Release Notes for details.

Version 2.6

Released: 19 Apr 2007
 

Version 2.6, an update to Release 2007a, includes the following enhancements:

• Enhanced support for reading Affymetrix files from expression, genotyping (SNP), or resequencing assays on all platforms, except Solaris
• Ability to perform background adjustment on Affymetrix microarray probe-level data using zone-based method
• New function for aligning two data sets containing sequential observations
• New demos for mass spectrometry functionality

See the Release Notes for details.

Version 2.5

Released: 01 Mar 2007
 

• Support for analysis of LCMS and GCMS data
• Ability to perform GCRMA background adjustment, quantile normalization, and RMA summarization of Affymetrix microarray probe-level data
• Ability to estimate false discovery rate (FDR) of differentially expressed genes
• Ability to display and manipulate 3-D molecule structures
• Expanded support vector machine classifier function
• Enhanced control of the phylogenetic tree display

See the Release Notes for details.

Version 2.4

Released: 01 Sep 2006
 
Version 2.4, part of Release 2006b, includes the following enhancements:

• New functions to parse annotated sequence data and read mzXML files
• New functions to apply basic graph theory algorithms to sparse matrices and biograph objects
• Updated functions to read and access data
• Updated functions to analyze and visualize microarray data
• Updated functions to align and visualize sequences

See the Release Notes for details.